Ejection Dynamics of Semiflexible Polymers out of a Nanochannel

Zhou Li-qin; Yu Wan-cheng; Chen Yu-hao; Luo Kai-fu

doi:10.1007/s10118-016-1842-0

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Ejection Dynamics of Semiflexible Polymers out of a Nanochannel

PAPERS | Updated：2021-05-12

- Ejection Dynamics of Semiflexible Polymers out of a Nanochannel
- Chinese Journal of Polymer Science Vol. 34, Issue 10, Pages: 1196-1207(2016)
- Affiliations：
  
  Chinese Academy of Sciences Key Laboratory of Soft Matter Chemistry, and Department of Polymer Science and Engineering, University of Science and Technology of China, Hefei 230026, China
- Author bio：
  
  Wan-cheng Yu (昱万程), E-mail: ywcheng@ustc.edu.cn
  Yu-hao Chen (陈宇浩), E-mail: cyh204@mail.ustc.edu.cn
- Funds：
- DOI：10.1007/s10118-016-1842-0
  CLC：
- Received：29 March 2016，
  
  Revised：2016-4-14，
  
  Accepted：15 April 2016，
  
  Published：05 October 2016
- Accepted：
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Zhou Li-qin, Yu Wan-cheng, Chen Yu-hao, et al. Ejection Dynamics of Semiflexible Polymers out of a Nanochannel[J]. Chinese Journal of Polymer Science, 2016, 34(10): 1196-1207.
DOI：

Zhou Li-qin, Yu Wan-cheng, Chen Yu-hao, et al. Ejection Dynamics of Semiflexible Polymers out of a Nanochannel[J]. Chinese Journal of Polymer Science, 2016, 34(10): 1196-1207. DOI： 10.1007/s10118-016-1842-0.

摘要

Abstract

Using theoretical analysis and three-dimensional Langevin dynamics simulations

we investigate the influence of chain rigidity on the ejection dynamics of polymers from a nanochannel. We find that there exist two distinct dynamical regimes divided by a critical chain length for both flexible and semiflexible chains. At the short chain regime

semiflexible chains eject faster than flexible chains of the same chain length due to the longer occupying length. In contrast

at the long chain regime

semiflexible chains eject slower than flexible ones as the effective entropic driving force decreases. Based on these results

we propose that the nanochannels could be used to separate flexible and semiflexible chains effectively

关键词

Keywords

references

J.O. Tegenfeldt, , C. Prinz, , H. Cao, , S. Chou, , W.W. Reisner, , R. Riehn, , Y.M. Wang, , E.C. Cox, , J.C. Sturm, . . Silberzan, P, Austin, R.H.Proc. Natl. Acad. Sci. U.S.A. , 2004 . 101 ( 30 ): 10979 DOI: 10.1073/pnas.0403849101 http://doi.org/10.1073/pnas.0403849101 .

Mannion, J.T., Reccius, C.H., Cross, J.D. and Craighead, H.G., Biophys. J., 2006, 90(12): 4538

J. Kindt, , S. Tzlil, . . Ben-Shaul, A, Gelbart, W.M.Proc. Natl. Acad. Sci. U.S.A. , 2001 . 98 ( 26 ): 13671 .

Odijk, T., Phil. Trans. R. Soc. Lond. A, 2004, 362(1820): 1497

I. Ali, . . Marenduzzo, D, Yeomans, J.M.J. Chem. Phys. , 2004 . 121 ( 17 ): 8635 .

Jiang, W., Chang, J., Jakana, J., Weigele, P., King, J. and Chiu, W., Nature, 2006, 439(7076): 612

E. Katzav, . . Adda-Bedia, M, Boudaoud, A.Proc. Natl. Acad. Sci. U.S.A. , 2006 . 103 ( 50 ): 18900 DOI: 10.1073/pnas.0609079103 http://doi.org/10.1073/pnas.0609079103 .

Petrov, A.S., Boz, M.B. and Harvey, S.C., J. Struct. Biol., 2007, 160(2): 241

S. Köster, . . Steinhauser, D, Pfohl, T.J. Phys.: Condens. Matter. , 2007 . 17 ( 49 ): S4091 .

Fu, C.L., Sun, Z.Y. and An, L.J., Chinese J. Polym. Sci., 2013, 31(3): 388

D.E. Smith, , S.J. Tans, , S.B. Smith, , S. Grimes, . . Anderson, D.L, Bustamante, C.Nature , 2001 . 413 ( 6587 ): 748 .

Cacciuto, A. and Luijten, E., Phys. Rev. Lett., 2006, 96(23): 238104

W.C Earnshaw, , S.C. Harrison, . . Nature , 1977 . 268 ( 5621 ): 598 DOI: 10.1038/268598a0 http://doi.org/10.1038/268598a0 .

A.A. Simpson, , Y. Tao, , P.G. Leiman, , M.O. Badasso, , Y. He, , P.J. Jardine, , N.H. Olson, , M.C. Morais, , S. Grimes, , D.L. Anderson, , T.S Baker, , M.G. Rossmann, . . Nature , 2000 . 408 ( 6813 ): 745 DOI: 10.1038/35047129 http://doi.org/10.1038/35047129 .

S Jun, , B. Mulder, . . Proc. Natl. Acad. Sci. U.S.A. , 2006 . 103 ( 33 ): 12388 DOI: 10.1073/pnas.0605305103 http://doi.org/10.1073/pnas.0605305103 .

S Jun, , A. Wright, . . Nat. Rev. Microbiol. , 2010 . 8 ( 8 ): 600 DOI: 10.1038/nrmicro2391 http://doi.org/10.1038/nrmicro2391 .

D Bates, , N. Kleckner, . . Cell , 2005 . 121 ( 6 ): 899 DOI: 10.1016/j.cell.2005.04.013 http://doi.org/10.1016/j.cell.2005.04.013 .

A Arnold, , S. Jun, . . Phys. Rev. E , 2007 . 76 ( 3 ): 031901 DOI: 10.1103/PhysRevE.76.031901 http://doi.org/10.1103/PhysRevE.76.031901 .

Y. Jung, , J. Kim, , S Jun, , B.Y. Ha, . . Macromolecules , 2012 . 45 ( 7 ): 3256 DOI: 10.1021/ma2025732 http://doi.org/10.1021/ma2025732 .

Y Liu, , B. Chakraborty, . . Phys. Biol. , 2012 . 9 ( 6 ): 066005 DOI: 10.1088/1478-3975/9/6/066005 http://doi.org/10.1088/1478-3975/9/6/066005 .

J. Shin, , A.G Cherstvy, , R. Metzler, . . New J. Phys. , 2014 . 16 ( 5 ): 053047 DOI: 10.1088/1367-2630/16/5/053047 http://doi.org/10.1088/1367-2630/16/5/053047 .

E Minina, , A. Arnold, . . Soft Matter , 2014 . 10 ( 31 ): 5836 DOI: 10.1039/C4SM00286E http://doi.org/10.1039/C4SM00286E .

J Dorier, , A. Stasiak, . . Nucleic Acids Res. , 2013 . 41 ( 14 ): 6808 DOI: 10.1093/nar/gkt480 http://doi.org/10.1093/nar/gkt480 .

J.M Polson, , L.G. Montgomery, . . J. Chem. Phys. , 2014 . 141 ( 16 ): 164902 DOI: 10.1063/1.4898714 http://doi.org/10.1063/1.4898714 .

B.Y Ha, , Y. Jung, . . Soft Matter , 2015 . 11 ( 12 ): 2333 DOI: 10.1039/C4SM02734E http://doi.org/10.1039/C4SM02734E .

J.J. Kasianowicz, , E. Brandin, , D Branton, , D.W. Deamer, . . Proc. Natl. Acad. Sci. U.S.A. , 1996 . 93 ( 24 ): 13770 DOI: 10.1073/pnas.93.24.13770 http://doi.org/10.1073/pnas.93.24.13770 .

W Sung, , P.J. Park, . . Phys. Rev. Lett. , 1996 . 77 ( 4 ): 783 DOI: 10.1103/PhysRevLett.77.783 http://doi.org/10.1103/PhysRevLett.77.783 .

M. Akeson, , D. Branton, , Kasianowicz , J. J. , E Brandin, , D.W. Deamer, . . Biophys. J. , 1999 . 77 ( 6 ): 3227 DOI: 10.1016/S0006-3495(99)77153-5 http://doi.org/10.1016/S0006-3495(99)77153-5 .

D.K Lubensky, , D.R. Nelson, . . Biophys. J. , 1999 . 77 ( 4 ): 1824 DOI: 10.1016/S0006-3495(99)77027-X http://doi.org/10.1016/S0006-3495(99)77027-X .

M. Muthukumar, . . J. Chem. Phys. , 1999 . 111 ( 22 ): 10371 DOI: 10.1063/1.480386 http://doi.org/10.1063/1.480386 .

M. Muthukumar, . . Phys. Rev. Lett. , 2001 . 86 ( 14 ): 3188 DOI: 10.1103/PhysRevLett.86.3188 http://doi.org/10.1103/PhysRevLett.86.3188 .

S.E. Henrickson, , M. Misakian, , B Robertson, , J.J. Kasianowicz, . . Phys. Rev. Lett. , 2000 . 85 ( 14 ): 3057 DOI: 10.1103/PhysRevLett.85.3057 http://doi.org/10.1103/PhysRevLett.85.3057 .

S. Howorka, , S Cheley, , H. Bayley, . . Nat. Biotechnol. , 2001 . 19 ( 7 ): 636 DOI: 10.1038/90236 http://doi.org/10.1038/90236 .

D.W Deamer, , D. Branton, . . Acc. Chem. Res. , 2002 . 35 ( 10 ): 817 DOI: 10.1021/ar000138m http://doi.org/10.1021/ar000138m .

A. Meller, . . J. Phys.: Condens. Matter , 2003 . 15 ( 17 ): R581 DOI: 10.1088/0953-8984/15/17/202 http://doi.org/10.1088/0953-8984/15/17/202 .

A. Meller, , L. Nivon, , E. Brandin, , J Golovchenko, , D. Branton, . . Proc. Natl. Acad. Sci. U.S.A. , 2000 . 97 ( 3 ): 1079 DOI: 10.1073/pnas.97.3.1079 http://doi.org/10.1073/pnas.97.3.1079 .

A. Meller, , L Nivon, , D. Branton, . . Phys. Rev. Lett. , 2001 . 86 ( 15 ): 3435 DOI: 10.1103/PhysRevLett.86.3435 http://doi.org/10.1103/PhysRevLett.86.3435 .

K. Luo, , T Ala-Nissila, , S.C. Ying, . . Phys. Rev. Lett. , 2008 . 100 ( 5 ): 058101 DOI: 10.1103/PhysRevLett.100.058101 http://doi.org/10.1103/PhysRevLett.100.058101 .

K. Luo, , T Ala-Nissila, , S.C. Ying, . . Phys. Rev. Lett. , 2007 . 99 ( 14 ): 148102 DOI: 10.1103/PhysRevLett.99.148102 http://doi.org/10.1103/PhysRevLett.99.148102 .

K. Luo, , T Ala-Nissila, , S.C. Ying, . . Phys. Rev. E , 2008 . 78 ( 6 ): 061911 DOI: 10.1103/PhysRevE.78.061911 http://doi.org/10.1103/PhysRevE.78.061911 .

K. Luo, , T Ala-Nissila, , S.C. Ying, . . Phys. Rev. E , 2008 . 78 ( 4 ): 061918 .

T. Ikonen, , J. Shin, , W Sung, , T. Ala-Nissila, . . J. Chem. Phys. , 2012 . 136 ( 20 ): 205104 DOI: 10.1063/1.4722080 http://doi.org/10.1063/1.4722080 .

Z.Y. Yang, , S.B. Li, , L.X. Zhang, , A Rehman, , H.J. Liang, . . J. Chem. Phys. , 2010 . 133 ( 15 ): 154903 DOI: 10.1063/1.3493332 http://doi.org/10.1063/1.3493332 .

X.J. Li, , X.L. Li, , M.G. Deng, , Liang, H.J. and . . Macromol. Theory Simul. , 2012 . 21 ( 2 ): 120 DOI: 10.1002/mats.201100079 http://doi.org/10.1002/mats.201100079 .

J.Y. Guo, , X.J. Li, , Liang, H.J. and . . Acta Polym. Sin. , 2012 . ( 12 ): 160 .

T.T. Sun, , H.Z Ma, , S.P. Deng, . . Chinese J. Polym. Sci. , 2011 . 29 ( 5 ): 520 DOI: 10.1007/s10118-011-1067-1 http://doi.org/10.1007/s10118-011-1067-1 .

M.M. Ding, , X.Z. Duan, , Y.Y Lu, , T.F. Shi, . . Chinese J. Polym. Sci. , 2015 . 33 ( 5 ): 674 DOI: 10.1007/s10118-015-1630-2 http://doi.org/10.1007/s10118-015-1630-2 .

R.V. Miller, . . Sci. Am. , 1998 . 278 ( 1 ): 66 DOI: 10.1038/scientificamerican0198-66 http://doi.org/10.1038/scientificamerican0198-66 .

W.C Earnshaw, , S.R. Casjiens, . . Cell , 1980 . 21 ( 2 ): 319 DOI: 10.1016/0092-8674(80)90468-7 http://doi.org/10.1016/0092-8674(80)90468-7 .

S.W.P. Turner, , M Cabodi, , H.G. Craighead, . . Phys. Rev. Lett. , 2002 . 88 ( 12 ): 128103 DOI: 10.1103/PhysRevLett.88.128103 http://doi.org/10.1103/PhysRevLett.88.128103 .

Reiner , . W , K.J. Morton, , R. Rühn, , Y.M. Wang, , Z. Yue, , M. Rosen, , J.C. Sturm, , S.Y. Chou, , E Frey, , R.H. Aistin, . . Phys. Rev. Lett. , 2005 . 94 ( 19 ): 196101 DOI: 10.1103/PhysRevLett.94.196101 http://doi.org/10.1103/PhysRevLett.94.196101 .

A. Evilevitch, , L. Lavelle, , C.M. Knobler, , E Raspaud, , W.M. Gelbart, . . Proc. Natl Acad. Sci. U.S.A. , 2003 . 100 ( 16 ): 9292 DOI: 10.1073/pnas.1233721100 http://doi.org/10.1073/pnas.1233721100 .

A. Evilevitch, , J.W. Gober, , M. Phillips, , C.M Knobler, , W.M. Gelbart, . . Biophys. J. , 2005 . 88 ( 1 ): 751 DOI: 10.1529/biophysj.104.045088 http://doi.org/10.1529/biophysj.104.045088 .

Frutos, M. de , L Letellier, , E. Raspaud, . . Biophys. J. , 2005 . 88 ( 2 ): 1364 DOI: 10.1529/biophysj.104.048785 http://doi.org/10.1529/biophysj.104.048785 .

P. Grayson, , L. Han, , T Winther, , R. Phillips, . . Proc. Natl. Acad. Sci. U.S.A. , 2007 . 104 ( 37 ): 14652 DOI: 10.1073/pnas.0703274104 http://doi.org/10.1073/pnas.0703274104 .

D. Löf, , K. Schillén, , B Jönsson, , A. Evilevitch, . . J. Mol. Biol. , 2007 . 368 ( 1 ): 55 DOI: 10.1016/j.jmb.2007.01.076 http://doi.org/10.1016/j.jmb.2007.01.076 .

A. Leforestier, , S. Brasilès, , Frutos, M. de , E. Raspaud, , L. Letellier, , P Tavares, , F. Livolant, . . J. Mol. Biol. , 2008 . 384 ( 3 ): 730 DOI: 10.1016/j.jmb.2008.09.035 http://doi.org/10.1016/j.jmb.2008.09.035 .

I. Ali, , D Marenduzzo, , J.M. Yeomans, . . Biophys. J. , 2011 . 94 ( 2 ): 4159 .

I Ali, , D. Marenduzzo, . . J. Chem. Phys. , 2011 . 135 ( 9 ): 095101 DOI: 10.1063/1.3617416 http://doi.org/10.1063/1.3617416 .

Q Cao, , M. Bachmann, . . Phys. Rev. E , 2014 . 90 ( 6 ): 060601 DOI: 10.1103/PhysRevE.90.060601 http://doi.org/10.1103/PhysRevE.90.060601 .

R. Matthews, , A.A Louis, , J.M. Yeomans, . . Phys. Rev. Lett. , 2009 . 102 ( 8 ): 088101 DOI: 10.1103/PhysRevLett.102.088101 http://doi.org/10.1103/PhysRevLett.102.088101 .

I. Ali, , D Marenduzzo, , J.M. Yeomans, . . Phys. Rev. Lett. , 2006 . 96 ( 20 ): 208102 DOI: 10.1103/PhysRevLett.96.208102 http://doi.org/10.1103/PhysRevLett.96.208102 .

A Muthukumar, , M. Yano, . . J. Phys. Soc. Jpn. , 2012 . 81 ( 3 ): 034802 DOI: 10.1143/JPSJ.81.034802 http://doi.org/10.1143/JPSJ.81.034802 .

A. Milchev, , L. Klushin, , A Skvortsov, , K. Binder, . . Macromolecules , 2010 . 43 ( 16 ): 6877 DOI: 10.1021/ma1003826 http://doi.org/10.1021/ma1003826 .

J Sheng, , K. Luo, . . Soft Matter , 2012 . 8 ( 2 ): 367 DOI: 10.1039/C1SM06562A http://doi.org/10.1039/C1SM06562A .

L. Klushin, , A Milchev, , A. Skvortsov, . . ACS Macro Lett. , 2013 . 2 ( 10 ): 879 DOI: 10.1021/mz400314d http://doi.org/10.1021/mz400314d .

O.V. Krasilnikov, , C.G Rodrigues, , S.M. Bezrukov, . . Phys. Rev. Lett. , 2006 . 97 ( 1 ): 018301 DOI: 10.1103/PhysRevLett.97.018301 http://doi.org/10.1103/PhysRevLett.97.018301 .

M Daoud, , Gennes, P.G. de . . J. Physique , 1977 . 38 ( 1 ): 85 DOI: 10.1051/jphys:0197700380108500 http://doi.org/10.1051/jphys:0197700380108500 .

de Gennes, P.G., “Scaling concepts in polymer physics”, Cornell University Press, Ithaca, NY, 1979

T. Odijk, . . Macromolecules , 1983 . 16 ( 8 ): 1340 DOI: 10.1021/ma00242a015 http://doi.org/10.1021/ma00242a015 .

T. Odijk, . . Macromolecules , 1986 . 19 ( 9 ): 2313 DOI: 10.1021/ma00163a001 http://doi.org/10.1021/ma00163a001 .

M. Dijkstra, , D Frenkel, , H.N.W. Lekkerkerker, . . Physica. A , 1993 . 193 ( 3 ): 374 .

T.W. Burkhardt, . . J. Phys. A , 1997 . 30 ( 7 ): L167 DOI: 10.1088/0305-4470/30/7/004 http://doi.org/10.1088/0305-4470/30/7/004 .

Y. Yang, , T.W Burkhardt, , G. Gompper, . . Phys. Rev. E , 2007 . 76 ( 1 ): 011804 .

Allen, M.P. and Tildesley, D.J., “Computer simulation of liquids”, Oxford University Press, Oxford, 1987

D.L Ermak, , H. Buckholz, . . J. Comput. Phys. , 1980 . 5 ( 2 ): 169 .

X. Wang, , M Tang, , Y. Wang, . . Macromol. Theory Simul. , 2015 . 24 ( 5 ): 490 DOI: 10.1002/mats.v24.5 http://doi.org/10.1002/mats.v24.5 .

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