Supramolecular Polymerization of DNA Double-Crossover-Like Motifs in Various Dimensions

Cui-Zheng Zhang; Da-Ke Mao; Victoria E. Paluzzi; Cheng-De Mao

doi:10.1007/s10118-023-2998-z

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Supramolecular Polymerization of DNA Double-Crossover-Like Motifs in Various Dimensions

REVIEW | Updated：2023-09-21

- Supramolecular Polymerization of DNA Double-Crossover-Like Motifs in Various Dimensions
- Chinese Journal of Polymer Science Vol. 41, Issue 10, Pages: 1501-1507(2023)
- Affiliations：
  
  Department of Chemistry, Purdue University, West Lafayette, IN 47906, USA
- Author bio：
  
  mao@purdue.edu
- Funds：
- DOI：10.1007/s10118-023-2998-z
  CLC：
- Received：01 April 2023，
  
  Revised：2023-5-2，
  
  Accepted：09 May 2023，
  
  Online First：12 June 2023，
  
  Published：01 October 2023
- Accepted：
Scan QR Code
Zhang, C. Z.; Mao, D. K.; Paluzzi, V. E.; Mao, C. D. Supramolecular polymerization of DNA double-crossover-like motifs in various dimensions. Chinese J. Polym. Sci. 2023, 41, 1501–1507

Cui-Zheng Zhang, Da-Ke Mao, Victoria E. Paluzzi, et al. Supramolecular Polymerization of DNA Double-Crossover-Like Motifs in Various Dimensions[J]. Chinese Journal of Polymer Science, 2023, 41(10): 1501-1507.
Zhang, C. Z.; Mao, D. K.; Paluzzi, V. E.; Mao, C. D. Supramolecular polymerization of DNA double-crossover-like motifs in various dimensions. Chinese J. Polym. Sci. 2023, 41, 1501–1507 DOI： 10.1007/s10118-023-2998-z.

Cui-Zheng Zhang, Da-Ke Mao, Victoria E. Paluzzi, et al. Supramolecular Polymerization of DNA Double-Crossover-Like Motifs in Various Dimensions[J]. Chinese Journal of Polymer Science, 2023, 41(10): 1501-1507. DOI： 10.1007/s10118-023-2998-z.

摘要

A simple

two-stranded

DNA motif can be programmed to self-assembly into large structures by hybridization between the sticky ends (single-stranded overhangs) of the motif. Depending on the detailed configurations (length

complementarity) of the sticky ends

the final structures can be either one-

two-

or three-dimensional supramolecular polymers.

Abstract

Double-crossover-like (DXL) molecules are a series of DNA motifs containing two strands with identical or different sequences. These homo- or hetero-dimers can further polymerize into bulk structures through specific hydrogen bonding between sticky ends. DXL molecules have high designability

predictivity and sequence robustness; and their supramolecular polymerization products would easily achieve controllable morphology. In addition

among all available DNA nanomotifs

DXL molecules are small in size so that the cost of DXL-based nanostructures is low. These properties together make DXL-based nanostructures good candidates for patterning

templating

information and matter storage

etc

. Herein

we will discuss DXL motifs in terms of the detailed molecular design

and their supramolecular polymerization in various dimensions

and related applications.

关键词

Keywords

references

DeGreef,T.F.A.;Smulders,M.M.J.;Wolffs,M.;Schenning,A.P.H.J.;Sijbesma,R.P.;Meijer,E.W.Supramolecularpolymerization. Chem. Rev. 2009 , 109 ,5687−5754..

Huang,F;Scherman,O.A.Supramolecularpolymers. Chem. Soc. Rev. 2012 , 41 ,5879−5880..

Zhang,X.Supramolecularpolymerchemistry:past,present,andfuture. Chinese J. Polym. Sci. 2022 , 40 ,541−542..

Aida,T.;Meijer,E.W.;Stupp,S.I.Functionalsupramolecularpolymers. Science 2012 , 335 ,813−817..

Jangizehi,A.;Ahmadi,M.;Seiffert,S.Emergence,evidence,andeffectofjunctionclusteringinsupramolecularpolymermaterials. Mater. Adv. 2021 , 2 ,1425−1453..

Xu,F.;Feringa,B.L.Photoresponsivesupramolecularpolymers:fromlight-controlledsmallmoleculestosmartmaterials. Adv. Mater. 2023 , 35 ,2204413..

Seeman,N.C.;Sleiman,H.F.DNAnanotechnology. Nat. Rev. Mater. 2017 , 3 ,17068..

Evans,C.G.;Winfree,E.PhysicalprinciplesforDNAtileself-assembly. Chem. Soc. Rev. 2017 , 46 ,3808−3829..

Pinheiro,A.V.;Han,D.;Shih,W.M.;Yan,H.ChallengesandopportunitiesforstructuralDNAnanotechnology. Nat. Nanotechnol. 2011 , 6 ,763−772..

Liu,H.;He,Y.;Ribbe,A.E.;Mao,C.Two-dimensional(2D)DNAcrystalsassembledfromtwoDNAstrands. Biomacromolecules. 2005 , 6 ,2943−2945..

Tian,C.;Zhang,C.;Li,X.;Li,Y.;Wang,G.;Mao,C.Artificial,parallel,left-handedDNAhelices. J. Am. Chem. Soc. 2012 , 134 ,20273−20275..

Zheng,M.;Li,Q.;Li,Q.;Paluzzi,V.E.;Choi,J.H.;Mao,C.EngineeringthenanoscaledmorphologiesoflinearDNAhomopolymers. Macromol. Rapid Commun. 2021 , 42 ,10−13..

Mao,D.;Paluzzi,V.E.;Zhang,C.;Mao,C.DNAconformationalequilibriumenablescontinuouschangingofcurvatures. Nanoscale 2023 , 15 ,470−475..

Liu,W.;Zhong,H.;Wang,R.;Seeman,N.C.Crystallinetwo-dimensionalDNA-origamiarrays. Angew. Chem. Int. Ed. 2011 , 50 ,264−267..

Yin,P.;Hariadi,R.F.;Sahu,S.;Choi,H.M.T.;Sung,H.P.;LaBean,T.H.;Reif,J.H.ProgrammingDNAtubecircumferences. Science 2008 , 321 ,824−826..

Afshan,N.;Zheng,H.;Xiao,S.J.HowsmallDNAminicirclescanbeappliedtoconstructDNAnanotubes. Chinese J. Chem. 2016 , 34 ,326−330..

Green,L.N.;Subramanian,H.K.K.;Mardanlou,V.;Kim,J.;Hariadi,R.F.;Franco,E.AutonomousdynamiccontrolofDNAnanostructureself-assembly. Nat. Chem. 2019 , 11 ,510−520..

He,Y.;Chen,Y.;Liu,H.;Ribbe,A.E.;Mao,C.Self-assemblyofhexagonalDNAtwo-dimensional(2D)arrays. J. Am. Chem. Soc. 2005 , 127 ,12202−12203..

Liu,H.;Chen,Y.;He,Y.;Ribbe,A.E.;Mao,C.Approachingthelimit:canoneDNAoligonucleotideassembleintolargenanostructures. Angew. Chem. Int. Ed. 2006 , 45 ,1942−1945..

Zhang,C.;He,Y.;Chen,Y.;Ribbe,A.E.;Mao,C.Aligningone-dimensionalDNAduplexesintotwo-dimensionalcrystals. J. Am. Chem. Soc. 2007 , 129 ,14134−14135..

Sobey,T.L.;Renner,S.;Simmel,F.C.AssemblyandmeltingofDNAnanotubesfromsingle-sequencetiles. J. Phys. Condens. Matter. 2009 , 21 ,034112..

Niu,L.;Yang,X.;Zhou,J.;Mao,C.;Liang;H.;Liang;D.MechanismofDNAassemblyasrevealedbyenergybarriers. Chem. Commun. 2015 , 51 ,7717−7720..

Zhang,C.;Zhao,J.;Lu,B.;Seeman,N.C.;Sha,R.;Noinaj,N.;Mao,C.EngineeringDNAcrystalstowardstudyingDNA-guestmoleculeinteractions. J. Am. Chem. Soc. 2023 , 145 ,4853−4859..

Seeman,N.C.Nucleicacidjunctionsandlattices. J. Theor. Biol. 1982 , 99 ,237−247..

Paukstelis,P.J.;Seeman,N.C.3DDNAcrystalsandnanotechnology. Crystals 2016 ,6,97..

Hu,Q.;Li;H.;Wang,L.;Gu,H.;Fan,C.DNAnanotechnology-enableddrugdeliverysystems. Chem. Rev. 2019 , 119 ,6459−6506..

Zhang,Y.;Tu,J.;Wang,D.;Zhu,H.;Maity,S.K.;Qu,X.;Bogaert,B.;Pei,H.;Zhang,H.ProgrammableandmultifunctionalDNA-basedmaterialsforbiomedicalapplications. Adv. Mater. 2018 , 30 ,1703658..

Chen,T.;Ren,L.;Liu,X.;Zhou,M.;Li,L.;Xu,J.;Zhu,X.DNAnanotechnologyforcancerdiagnosisandtherapy. Int. J. Mol. Sci. 2018 ,19,1671..

Ko,S.;Liu,H.;Chen,Y.;Mao,C.DNAnanotubesascombinatorialvehiclesforcellulardelivery. Biomacromolecules 2008 , 9 ,3039−3043..

Delebecque,C.J.;Lindner,A.B.;Silver,P.A.;Aldaye,F.A.OrganizationofintracellularreactionswithrationallydesignedRNAassemblies. Science 2011 , 333 ,470−474..

Shi,J.;Zhu,C.;Li,Q.;Li,Y.;Chen,L.;Yang,B;Xu,J.F.;Dong,Y.;Mao,C.;Liu,D.KineticallyInterlockingmultiple-unitspolymerizationofDNAdoublecrossoveranditsapplicationinhydrogelformation. Macromol. Rapid Commun. 2021 , 42 ,2100182..

Chen,G.;Mao,C.Longconductingpolymernanonecklaceswitha‘beads-on-a-string’morphology:DNAnanotube-templatesynthesisandelectricalproperties. Nanoscale 2016 , 8 ,10026−10029..

Kim,F.;Chen,T.;Burgess,T.;Rasie,P.;Selinger,T.L.;Greschner,A.;Rizis,G.;Carneiro,K.FunctionalizedDNAnanostructuresasscaffoldsforguidedmineralization. Chem Sci. 2019 , 10 ,10537−10542..

Tian,C.;Kim,H.;Sun,W.;Kim,Y.;Yin,P.;Liu,H.DNAnanostructures-mediatedmolecularimprintinglithography. ACS Nano 2017 , 10 ,227−238..

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